Systematic List of UM-BBD Pathways

Compounds are classified primarily on the presence or absence of halogens, nitrogen, phosphorus or sulfur. Those containing more than one of these four elements are classified under the heading of the element with the highest atomic weight. Compounds containing only carbon, oxygen, and hydrogen are classified under the headings "Other Aromatic Compounds" or "Other Aliphatic Compounds" based on the presence or absence of an aromatic ring. Aromatic compounds containing aldehyde or acid groups and hydroxyl groups are included under the "Acids or Aldehydes" subheading, not under the subheading of "Ethers and Phenols". Aromatic compounds containing only hydrogen and carbon are listed under the subheading of "Hydrocarbons". The "Other Aliphatic Compounds" heading includes all other non-aromatic compounds containing only carbon, hydrogen, and possibly oxygen. The "Other Compounds" heading is for compounds that do not fit in any of the other categories. All compounds are listed under only one heading.

All pathways are aerobic unless otherwise indicated. The number of pathways listed in each of the seven categories is indicated in parenthesis after the heading name. An alphabetical list of all pathways and a list of organic functional groups found in UM-BBD compounds are also available.

I. Compounds Containing Halogens
II. Compounds Containing Sulfur
III. Compounds Containing Phosphorus
IV. Compounds Containing Nitrogen
V. Other Aromatic Compounds
VI. Other Aliphatic Compounds
VII. Other Compounds

I. Compounds Containing Halogens (37)
A. Chlorinated Aromatic and N-heterocyclic Compounds
Atrazine Chlorobenzene 2-Chlorobenzoate 4-Chlorobiphenyl 4-Chlorophenoxyacetate 2,4-Dichloroaniline 1,4-Dichlorobenzene 2,4-Dichlorobenzoate 2,6-Dichlorobenzonitrile 3,5-Dichlorocatechol 2,6-Dichlorophenol 2,4-Dichlorophenoxyacetate 1,3-Dichloropropene Family 2,4-Dichlorotoluene Iprodione Pentachlorophenol 1,2,3,4-Tetrachlorobenzene 2,4,6-Trichlorophenol 2,4,5-Trichlorophenoxyacetate 1,1,1,-Trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT) (aerobic) (anaerobic) 1,2,4-Tricholrobenzene
B. Other Cholorinated Compounds
Carbon Tetrachloride (anaerobic) 3-Chloroacrylic acid 1,2-Dichloroethane 2-Chloro-N-isopropylacetanilide Dichloromethane 1,3-Dichloro-2-propanol beta-Hexachlorocyclohexane (an/aerobic) gamma-Hexachlorocyclohexane Perchlorate Tetrachloroethene (anaerobic) Trichloroethylene (TCE) 1,1,1-Trichloroethane (TCA)
C. Other Halogenated Compounds
3-Fluorobenzoate 4-Fluorobenzoate Methyl fluoride 1,2,3-Tribromopropane
II. Compounds Containing Sulfur (19)
A. Sulfates and Sulfonates
2-Aminobenzene sulfonate Branched-Chain Dodecylbenzene Sulfonate Dodecyl sulfate Methanesulfonic Acid Toluene-4-sulfonate
B. Other Compounds Containing Sulfur
Asulam Dibenzothiophene (biodegradation) (desulfurization) Dimethyl sulfoxide 3,3'-Dithiodipropionate Endosulfan Hydrogen sulfide Parathion (Diethyl p-nitrophenyl thiophosphate) 2-Mercaptobenzothiazole Methionine Thioacetamide Thiobenzamide Thiocyanate thiophene-2-carboxylate Benzyl Sulfide
III. Compounds Containing Phosphorus (4)
Glyphosate Dimethyl phosphinic acid Hypophosphite Fosfomycin
IV. Compounds Containing Nitrogen (46)
A. Amines and N-Heterocyclic Compounds
2-Aminobenzoate (aerobic) (anaerobic) 1-Aminocyclopropane-1-carboxylate Caffeine (fungal) N,N-Diethyl-m-toluamide Hexadecyltrimethylammonium chloride Hexahydro-1,3,5-trinitro-1,3,5-triazine (aerobic) (anaerobic) 4-Hydroxypyridine Isoniazid Metamitron Methylamine 3-Methylquinoline Morpholine N-Cyclopropylmelamine Nicotine Nitrilotriacetate (an/aerobic) N-Nitrosodimethylamine N-Methylmorpholine-N-oxide Pyridoxine Pyrrole-2-carboxylate Quinaldine Thiamin Threonine Triethanolamine Tyrosine (3-(p-Hydroxyphenyl)alanine)
B. Nitro- and Nitrile Compounds
Acrylonitrile Benzonitrile Bromoxynil Cyanamide 2,4-Dinitrotoluene N-Cyclohexylisocyanide Nitrobenzene Nitroglycerin 4-Nitrophenol 2-Nitropropane 3-Nitrotyrosine Family Z-Phenylacetaldoxime Picric acid Trinitrotoluene (TNT) (aerobic) (anaerobic)
C. Other Compounds Containing Nitrogen
Caprolactam Carbaryl Carbazole Carbofuran 4-Carboxy-4'-sulfoazobenzene Isoproturon Pentaerythritol tetranitrate Nylon oligomer
V. Other Aromatic Compounds (47)
A. Acids or Aldehydes
Benzoate (aerobic) (anaerobic) Cyanuric acid Furfural Gallate (3,4,5-Trihydroxybenzoate) (anaerobic) Mandelate (Benzeneacetic acid) 4-Methoxybenzoate Mordant Yellow 3 1-Naphthoic Acid Phenylboronic acid 3-Phenylpropionate o-Phthalate p-Phthalate Vanillin
B. Ethers and Phenols
Bisphenol A Bisphenol F m-Cresol Dibenzofuran Dibenzo-p-dioxin 3-Hydroxybenzyl alchohol 4-Hydroxyacetophenone Orcinol Phenol (anaerobic) 4-(1-Ethyl-1,4-dimethyl-pentyl)phenol Quercetin Resorcinol Tetrabromobisphenol A
C. Hydrocarbons
Anthracene (fungal) Benzene Benzo(a)pyrene Biphenyl p-Cymene (p-Isopropyltoluene) Dimethyl Isopthalate Ethylbenzene (aerobic) (anaerobic) Fluorene 3-Fluorobenzoate 4-Fluorobenzoate 1-Methylnaphthalene 2-Methylnaphthalene (aerobic) (anaerobic) Naphthalene Phenanthrene (bacterial) (fungal 9S, 10S) (fungal 9R,10R) Styrene Toluene (aerobic) (anaerobic) o-Xylene m-Xylene p-Xylene Pyrene Tetralin
VI. Other Aliphatic Compounds (21)
A. Alcohols, Ethers, Ketones and Alicyclic Compounds
Adamantanone (+)-Camphor Citronellol Cyclohexanol Dimethyl ether Diphenyl ether Geraniol Limonene alpha-Pinene (-)-(1R,2S,5R)-Menthol Methyl ethyl ketone (MEK, or 2-Butanone) Methyl tert-butyl ether Pivalic Acid (anaerobic) Testosterone Tetrahydrofuran
B. Hydrocarbons
Acetylene (an/aerobic) Isooctane C1 Metabolic Cycle n-Hexane n-Octane Propylene
VII. Other Compounds (8)
Arsonoacetate Tri-n-butyltin Triphenyltin Organomercury Organosilicone (an/aerobic) Selenate Technetium Uranium

Page author(s): Stephen Stephens, Ben Vickers, Guang Yao and Junfeng Gao

November 11, 2009 Contact Us

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