UM-BBD Graphics Index

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This page lists the 4 graphical metapathway maps, 205 graphical pathway maps, and 35 reaction mechanisms present in the UM-BBD. There is a graphic list of all organic functional groups found in the UM-BBD. In addition, each compound page contains an inline image of its compound and each reaction page links to a graphic of its reaction.

Graphical Metapathway Maps
UM-BBD Metapathway Map (16k)
BTEX Metabolism Metapathway Map (7k)
BTEX Metabolism Metapathway Map (anaerobic) (6k)
s-Triazine Metabolism Metapathway (20k)

Graphical Pathway Maps
Pathway	Graphical Pathway Map
Acetylene	Graphical Pathway Map (8k)
Acrylonitrile	Graphical Pathway Map (10k)
Adamantanone	Graphical Pathway Map (10k)
2-Aminobenzenesulfonate	Graphical Pathway Map (10k)
2-Aminobenzoate	Graphical Pathway Map (11k)
2-Aminobenzoic acid (Anaerobic)	Graphical Pathway Map (7k)
1-Aminocyclopropane-1-carboxylate	Graphical Pathway Map (8k)
Anthracene	Graphical Pathway Map 1 (20k)
Anthracene	Graphical Pathway Map 2 (5k)
Anthracene (fungal)	Graphical Pathway Map (5k)
Arsonoacetate	Graphical Pathway Map(4k)
Asulam	Graphical Pathway Map(7k)
Atrazine	Graphical Pathway Map 1 (12k)
Atrazine	Graphical Pathway Map 2 (29k)
Benzo(a)pyrene	Graphical Pathway Map 1 (22k) Graphical Pathway Map 2 (16k)
Benzoate	Graphical Pathway Map (7k)
Benzoate (Anaerobic)	Graphical Pathway Map 1 (13k)
	Graphical Pathway Map 2 (10k)
	Graphical Pathway Map 3 (11k)
Benzonitrile	Graphical Pathway Map (5k)
Benzyl Sulfide	Graphical Pathway Map (8k)
Biphenyl	Graphical Pathway Map (10k)
Bisphenol F	Graphical Pathway Map (10k)
Bromoxynil	Graphical Pathway Map (18k)
Caffeine	Graphical Pathway Map (15k)
Caffeine (fungal)	Graphical Pathway Map (13k)
(+)-Camphor	Graphical Pathway Map (14k)
Caprolactam	Grahical Pathway Map (8K)
C1 Metabolic Cycle	Graphical Pathway Map (9k)
Carbaryl	Graphical Pathway Map (4k)
Carbazole	Graphical Pathway Map (10k)
Carbofuran	Graphical Pathway Map 1 (9k)
Carbofuran	Graphical Pathway Map 2 (5k)
Cyclopropanecarboxylate Pathway	Graphical Pathway Map (6k)
Carbon Tetrachloride (anaerobic)	Graphical Pathway Map (14k)
4-Carboxy-4'-Sulfoazobenzene	Graphical Pathway Map (10k)
3-Chloroacrylic acid	Graphical Pathway Map (7k)
Chlorobenzene	Graphical Pathway Map (11k)
4-Chlorobiphenyl	Graphical Pathway Map (9k)
2-Chloro-N-isopropylacetanilide	Graphical Pathway Map (14k)
Chromium(VI)	Graphical Pathway Map (14k)
Citronellol	Graphical Pathway Map (19k)
m-Cresol	Graphical Pathway Map (13k)
Cyanamide	Graphical Pathway Map (3k)
Cyclohexanol	Graphical Pathway Map (10k)
N-Cyclohexylisocyanide	Graphical Pathway Map (4k)
Cyclohexylsulfamate	Graphical Pathway Map (10k)
p-Cymene	Graphical Pathway Map (13k)
Dibenzo-p-Dioxin	Graphical Pathway Map (6k)
Dibenzofuran	Graphical Pathway Map (8k)
Dibenzothiophene	Graphical Pathway Map (13k)
Dibenzothiophene Desulfurization	Graphical Pathway Map (7k)
2,6-Dichlorobenzonitrile	Graphical Pathway Map (8k)
1,4-Dichlorobenzene	Graphical Pathway Map (9k)
2,4-Dichlorobenzoate	Graphical Pathway Map (14k)
1,2-Dichloroethane	Graphical Pathway Map (9k)
Dichloromethane	Graphical Pathway Map (3k)
2,4-Dichlorophenoxyacetic Acid	Graphical Pathway Map 1 (12k)
2,4-Dichlorophenoxyacetic Acid	Graphical Pathway Map 2 (18k)
1,3-Dichloro-2-propanol Pathway	Graphical Pathway Map (14k)
1,3-Dichloropropene Family Pathway	Graphical Pathway Map (17k)
2,4-Dichlorotoluene	Graphical Pathway Map (14k)
N,N-Diethyl-m-toluamide	Graphical Pathway Map (4k)
Dimethyl ether	Graphical Pathway Map (5k)
Dimethyl isophthalate	Graphical Pathway Map (8k)
Dimethyl phosphinic acid	Graphical Pathway Map (6k)
Dimethyl Sulfoxide & Organosulfide Cycle Map	Graphical Pathway Map (7k)
2,4-Dinitrotoluene	Graphical Pathway Map (15k)
3,3'-Dithiodipropionate	Graphical Pathway Map (8k)
Branched-Chain Dodecylbenzene Sulfonate	Graphical Pathway Map (9k)
Dodecyl Sulfate	Graphical Pathway Map (7k)
Endosulfan	Graphical Pathway Map (10k)
Ethylbenzene	Graphical Pathway Map (20k)
Ethylbenzene (anaerobic)	Graphical Pathway Map (25k)
Fluorene	Graphical Pathway Map (36k)
3-Fluorobenzoate	Graphical Pathway Map (9k)
4-Fluorobenzoate	Graphical Pathway Map (12k)
Fosfomycin	Graphical Pathway Map (9k)
Furfural	Graphical Pathway Map (7k)
Gallate	Graphical Pathway Map (17k)
Geraniol	Graphical Pathway Map (5k)
Glyphosphate	Graphical Pathway Map (9k)
beta-Hexachlorocyclohexane	Graphical Pathway Map (10k)
gamma-Hexachlorocyclohexane	Graphical Pathway Map (18k)
Hexadecyltrimethylammonium chloride	Graphical Pathway Map 1 (4k)
Hexadecyltrimethylammonium chloride	Graphical Pathway Map 2 (5k)
Hexahydro-1,3,5-Trinitro-1,3,5-Triazine	Graphical Pathway Map (18k)
Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (anaerobic)	Graphical Pathway Map 1 (15k)
Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (anaerobic)	Graphical Pathway Map 2 (7k)
n-Hexane	Graphical Pathway Map 1 (15k)
n-Hexane	Graphical Pathway Map 2 (14k)
4-Hydroxyacetophenone	Graphical Pathway Map (5k)
4-Hydroxypyridine	Graphical Pathway Map (8k)
Hypophosphite	Graphical Pathway Map (3k)
Iprodione	Graphical Pathway Map (3k)
Isoniazid	Graphical Pathway Map (23k)
Isooctane	Graphical Pathway Map (22k)
Isoproturon	Graphical Pathway Map (23k)
Limonene	Graphical Pathway Map 1 (22k)
Limonene	Graphical Pathway Map 2 (6k)
Mandelate	Graphical Pathway Map (5k)
Menthol (anaerobic)	Graphical Pathway Map (9k)
2-Mercaptobenzothiazole	Graphical Pathway Map 1 (10k)
2-Mercaptobenzothiazole	Graphical Pathway Map 2 (16k)
Metamitron	Graphical Pathway Map 1 (8k)
Metamitron	Graphical Pathway Map 2 (6k)
Methanesulfonic acid	Graphical Pathway Map (6k)
Methanogenesis	Graphical Pathway Map (33k)
Methionine and Threonine	Graphical Pathway Map (8k)
Methyl tert-butyl ether	Graphical Pathway Map (16k)
Methyl ethyl ketone	Graphical Pathway Map (6k)
Methyl fluoride	Graphical Pathway Map (3k)
1-Methylnaphthalene	Graphical Pathway Map (30k)
1-Methylnaphthalene	Graphical Pathway Map (20k)
2-Methylnaphthalene	Graphical Pathway Map (20k)
2-Methylnaphthalene	Graphical Pathway Map (5k)
2-Methylnaphthalene (anaerobic)	Graphical Pathway Map (14k)
3-Methylquinoline	Graphical Pathway Map (15k)
N-Methylmorpholine-N-oxide	Graphical Pathway Map (4k)
Morpholine	Graphical Pathway Map (4k)
Napthalene	Graphical Pathway Map (14k)
Naphthalenesulfonate Family	Graphical Pathway Map (19k)
1-Naphthoic Acid	Graphical Pathway Map (18k)
Nitrilotriacetate	Graphical Pathway Map (10k)
2-Nitropropane	Graphical Pathway Map (4k)
Nitrobenzene	Graphical Pathway Map (19k)
o-Nitrobenzoate	Graphical Pathway Map (19k)
Nitroglycerin	Graphical Pathway Map (8k)
Nicotine	Graphical Pathway Map (15k)
4-Nitrophenol	Graphical Pathway Map 1 (15k)
4-Nitrophenol	Graphical Pathway Map 2 (6k)
Nylon Oligomer	Graphical Pathway Map (3k)
N-Nitrosodimethylamine	Graphical Pathway Map (10k)
3-Nitrotyrosine Family	Graphical Pathway Map (9k)
n-Octane	Graphical Pathway Map (10k)
N-Oleoyl-N-methyltaurine	Graphical Pathway Map (6k)
Orcinol	Graphical Pathway Map (5k)
Organomercury	Graphical Pathway Map (10k)
Organosilicone (an/aerobic)	Graphical Pathway Map (13k)
Parathion	Graphical Pathway Map 1 (8k)
Parathion	Graphical Pathway Map 2 (11k)
Z-Phenylacetaldoxime	Graphical Pathway Map (8k)
Pentachlorophenol Family	Graphical Pathway Map (9k)
Pentaerythritol tetranitrate	Graphical Pathway Map (8k)
Perchlorate (anaerobic)	Graphical Pathway Map (8k)
Phenanthrene	Graphical Pathway Map 1 (20k)
Phenanthrene	Graphical Pathway Map 2 (15k)
Phenanthrene (fungal 9S, 10S)	Graphical Pathway Map (32k)
Phenanthrene (fungal 9R, 10R)	Graphical Pathway Map 1 (24k)
	Graphical Pathway Map 2 (21k)
	Graphical Pathway Map 3 (10k)
Phenol (Anaerobic)	Graphical Pathway Map (8k)
4-(1-Ethyl-1,4-dimethyl-pentyl)phenol	Graphical Pathway Map (3k)
Phenylboronic Acid	Graphical Pathway Map (5k)
3-Phenylpropionate	Graphica l Pathway Map (10k)
Phthalate Family	Graphical Pathway Map (15k)
alpha-Pinene	Graphical Pathway Map (8k)
Picric acid	Graphical Pathway Map (16k)
Pivalic Acid (Anaerobic)	Graphical Pathway Map (5k)
Propylene	Graphical Pathway Map (8k)
Pyrene	Graphical Pathway Map 1 (13k)
Pyrene	Graphical Pathway Map 2 (10k)
Pyridoxine	Graphical Pathway Map 1 (17k)
Pyridoxine	Graphical Pathway Map 2 (9k)
Pyrrole-2-carboxylate	Graphical Pathway Map (11k)
Quercetin	Graphical Pathway Map (8k)
Quinaldine	Graphical Pathway Map (8k)
Styrene	Graphical Pathway Map 1 (17k)
Styrene	Graphical Pathway Map 2 (13k)
Testosterone	Graphical Pathway Map 1 (14k)
Testosterone	Graphical Pathway Map 2 (11k)
Tetrachloroethene (Anaerobic)	Graphical Pathway Map (9k)
Tetrahydrofuran	Graphical Pathway Map (9k)
Tetralin	Graphical Pathway Map 1 (5k)
Tetralin	Graphical Pathway Map 2 (15k)
Thiamin	Graphical Pathway Map (9k)
Thioacetamide	Graphical Pathway Map (5k)
Thiobenzamide	Graphical Pathway Map (5k)
Thiocyanate	Graphical Pathway Map 1 (7k)
Thiocyanate	Graphical Pathway Map 2 (5k)
Thiophene-2-Carboxylate	Graphical Pathway Map (11k)
Toluene	Graphical Pathway Map 1 (9k)
Toluene	Graphical Pathway Map 2 (15k)
Toluene (anaerobic)	Graphical Pathway Map (14k)
Toluene-4-sulfonate	Graphical Pathway Map (16k)
1,2,3-Tribromopropane	Graphical Pathway Map (12k)
Trifluoroacetate	Graphical Pathway Map (9k)
Tri-n-butyltin	Graphical Pathway Map (12k)
1,2,4-Trichlorobenzene	Graphical Pathway Map (16k)
1,1,1-Trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT)	Graphical Pathway Map (21k)
1,1,1-Trichloro-2,2-bis-(4-chlorophenyl)ethane(anaerobic) (DDT)	Graphical Pathway Map (20k)
1,1,1-Trichloroethane (an/aerobic)	Graphical Pathway Map (8k)
Trichloroethylene	Graphical Pathway Map (16k)
2,4,5-Trichlorophenoxyacetic Acid	Graphical Pathway Map (15k)
Triethanolamine	Graphical Pathway Map (10k)
2,4,6-Trinitrotoluene	Graphical Pathway Map 1 (21k)
2,4,6-Trinitrotoluene	Graphical Pathway Map 2 (19k)
2,4,6-Trinitrotoluene (anaerobic)	Graphical Pathway Map (22k)
Triphenyltin	Graphical Pathway Map (4k)
Tyrosine	Graphical Pathway Map (16k)
Uranium	Graphical Pathway Map (5k)
Valanimycin Synthesis	Graphical Pathway Map (7k)
Vanilline	Graphical Pathway Map (17k)
m-Xylene	Graphical Pathway Map (13k)
o-Xylene	Graphical Pathway Map (14k)
p-Xylene	Graphical Pathway Map (16k)

Reaction Mechanisms
Reaction and Associated Keywords	Mechanism
Acetylene --------> Acetaldehyde hydratase, addition, triple bond	Graphic (26k)
Acrylonitrile --------> Acrylamide hydratase, addition, triple bond	Graphic (19k)
Arsenate--------> Arsenite reductase, addition	Graphic (16k)
Atrazine -----> Hydroxyatrazine hydrolase, dechlorination, s-triazine	QT Animation [23k]
Benzene ----> cis-Dihydrobenzenediol dioxygenase, NADH, aromatic	Graphic (5k)
Benzoylformate --------> Benzaldehyde decarboxylase, ThDP, enamine tautomerization	Graphic (13k)
(+)-Camphor --------> 5-exo-Hydroxycamphor monooxygenase, P450_cam, stereospecific hydroxylation	Graphic (16k)
Carbonyl sulfide ----> Carbon monoxide nitrogenase, C-S bond cleavage	Graphic (6k)
Cyclohexanone ----> 1-Oxa-2-oxocycloheptane monooxygenase, NADP, FAD, Baeyer Villiger oxidation	Graphic (14k)
2,5-Dichlorohydroquinone ----> Chlorohydroquinone reductive dehalogenase, nucleophilic aromatic substitution	Graphic(24K)
Dichloromethane ----> Formaldehyde glutathione, transferase, dechlorination	Graphic (10k)
Dimethyl sulfoxide --------> Dimethyl sulfide reductase, molybdopterin	Graphic (12k)
Isobutylhydroxylamine + Serine ----> Valanimycin azoxy group formation	Graphic (10k)
(R)-Mandelate ----> (S)-Mandelate racemase, epimerization	Graphic (13k)
Methane ----> Methanol iron monoxygenase, hydroxylation	Graphic (75k)
Methionine ----> Methanethiol + 2-Oxobutanoate lyase, pyridoxal	Graphic (13k)
Methylamine ----> Formaldehyde dehydrogenase, quinoprotein	Graphic (8k)
Mercury(II) --------> Mercury reductase, flavoprotein, disulfide	Graphic (20k)
2-Nitropropane --------> Acetone oxidoreductases, iron flavoprotein	Graphic (30k)
Methylmercury chloride -----> Mercury (II) + Methane lyase, carbon-metal bond	Graphic (22k)
3-Methylquinoline --------> 3-Methyl-2-oxo-1,2-dihydroquinoline oxidase, molybdenum	Graphic (23k)
Phthalate ----> Phthalate 4,5-cis-dihydrodiol dioxygenase, NADH, aromatic	Graphic (18k)
Phenylboronic acid ----> Phenol monooxygenase, C-B bond cleavage	Graphic (18k)
Propylene oxide --------> Acetoacetate carboxylase, NAD⁺, NADPH	Graphic (17k)
Pyrogallol ----> Phloroglucinol transhydroxylase, molybdenum	Graphic (16k)
Quercetin --------> 2-Protocatechoylphloroglucinolcarboxylate dioxygenase, copper, CO, C-C bond cleavage	Graphic (9k)
Styrene ----> Styrene oxide monooxygenase, epoxidation, FAD, NAD(P)	Graphic (11k)
Styrene oxide ----> Phenylacetaldehyde isomerase, oxirane opening	Graphic (10k)
4-Sulfobenzoate --------> Protocatechuate dioxygenase, desulfonylation	Graphic (12k)
Thiamin --------> Formylaminopyrimidine spontaneous hydrolysis	Graphic (10k)
Thiocyanate --------> Carbonyl sulfide hydrolase, addition, triple bond	Graphic (14k)
Trichloroethylene ----> Glyoxylate dioxygenase, C-C bond cleavage	Graphic (7k)
Trichloroethylene ----> Formate dioxygenase, C-C bond cleavage	Graphic (7k)
Trichloroethylene ---->Chloral hydrate monooxygenation, epoxidation, chloride migration	Graphic (9k)
Trichloroethylene ---->Trichloroethylene epoxide monooxygenation, epoxidation, chloride migration	Graphic (9k)

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Page Author(s): Stephen Stephens, Jingfeng Feng, Guang Yao, Wenjun Kang and Junfeng Gao

January 12, 2010 Contact Us

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http://umbbd.msi.umn.edu/search/graph_BBD.html

UM-BBD Graphics Index

Graphical Metapathway Maps

Graphical Pathway Maps

Reaction Mechanisms