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Microbial biocatalytic reactions and biodegradation pathways.

EBI mirror | KEGG mirror

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• What's New? Last updated April 18, 2008.

• Search the UM-BBD for compound, enzyme, microorganism, pathway, or BT rule name; chemical formula; chemical structure; CAS Registry Number; or EC code.

• Pathways and Metapathways in the UM-BBD

  - Select a Pathway - Acetylene (an/aerobic) Acrylonitrile Adamantanone 2-Aminobenzenesulfonate 2-Aminobenzoate 2-Aminobenzoate (anaerobic) 1-Aminocyclopropane-1-carboxylate Anthracene Arsonoacetate Atrazine Benzo(a)pyrene Benzoate Benzoate (anaerobic) Benzonitrile Benzyl Sulfide Biphenyl Bisphenol A Bromoxynil (an/aerobic) BTEX Metapathway C1 Metabolic Cycle Caffeine Caffeine (fungal) (+)-Camphor Caprolactam Carbazole Carbon Tetrachloride (anaerobic) 4-Carboxy-4'-sulfoazobenzene 3-Chloroacrylic Acid Family Chlorobenzene 4-Chlorobiphenyl 2-Chloro-N-isopropylacetanilide Chromium(VI) Citronellol m-Cresol Cyanamide Cyanuric acid Cyclohexane N-Cyclohexylisocyanide Cyclohexylsulfamate Cyclopropanecarboxylate N-Cyclopropylmelamine p-Cymene Dibenzo-p-Dioxin Dibenzofuran Dibenzothiophene Dibenzothiophene Desulfurization 2,4-Dichloroaniline 1,4-Dichlorobenzene 2,4-Dichlorobenzoate 1,2-Dichloroethane Dichloromethane 2,4-Dichlorophenoxyacetic Acid 1,3-Dichloro-2-propanol 1,3-Dichloropropene Family 2,4-Dichlorotoluene Dimethyl ether Dimethyl phosphinic acid Dimethyl sulfoxide & Organosulfide Cycle Branched-Chain Dodecylbenzene Sulfonate Dodecyl Sulfate Endosulfan Ethylbenzene Ethylbenzene (anaerobic) Fluorene 3-Fluorobenzoate 4-Fluorobenzoate Fosfomycin Gallate (anaerobic) Geraniol Glyphosate beta-Hexachlorocyclohexane gamma-Hexachlorocyclohexane Hexadecyltrimethylammonium chloride Hexahydro-1,3,5-trinitro-1,3,5-triazine Hexahydro-1,3,5-trinitro-1,3,5-triazine (anaerobic) n-Hexane (anaerobic) 4-Hydroxyacetophenone 4-Hydroxypyridine Hypophosphite Isoniazid Isooctane Iprodione Isoproturon Limonene Mandelate Menthol (anaerobic) 2-Mercaptobenzothiazole Methanesulfonic Acid Methanogenesis Methionine & Threonine Methylarsonate Methyl ethyl ketone Methyl fluoride 1-Methylnaphthalene 2-Methylnaphthalene 2-Methylnaphthalene (anaerobic) 3-Methylquinoline Methyl tert-butyl ether Mordant Yellow 3 (an/aerobic) Naphthalene Naphthalenesulfonate Family 1-Naphthoic Acid Nicotine Nitrilotriacetate Nitrobenzene o-Nitrobenzoate Nitroglycerin Nitrophenol Family (an/aerobic) 2-Nitropropane N-Nitrosodimethylamine Nylon oligomer n-Octane Osmium Orcinol Organomercury Organosilicone (an/aerobic) Parathion Pentachlorophenol Family Pentaerythritol tetranitrate Perchlorate (anaerobic) Phenanthrene Phenanthrene (fungal 9S,10S) Phenanthrene (fungal 9R,10R) Phenol (anaerobic) Phenol Family 4-(1-Ethyl-1,4-dimethyl-pentyl)phenol Z-Phenylacetaldoxime 3-Phenylpropionate Phthalate Family Picric Acid alpha-Pinene Pivalic Acid Propylene Pyrene Pyrrole-2-carboxylate Quercetin Selenate Styrene Technetium Testosterone Tetrabromobisphenol A Tetrachlorobenzene Tetrachloroethene (anaerobic) Tetrahydrofuran Tetralin Thioacetamide Thiobenzamide Thiocyanate Thiophene-2-Carboxylate Toluene Toluene (anaerobic) Toluene-4-sulfonate s-Triazine Metapathway 1,2,3-Tribromopropane Trifluoroacetate (an/aerobic) Tri-n-butyltin 1,1,1-Trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT) 1,1,1-Trichloro-2,2-bis-(4-chlorophenyl)ethane (anaerobic) (DDT) 1,2,4-Trichlorobenzene 1,1,1-Trichloroethane (an/aerobic) Trichloroethylene 2,4,5-Trichlorophenoxyacetic Acid Triethanolamine 2,4,6-Trinitrotoluene 2,4,6-Trinitrotoluene (anaerobic) Triphenyltin Tyrosine Uranium Immobilization Valanimycin Synthesis Vanillin m-Xylene o-Xylene p-Xylene

• Lists of 172 pathways; 1188 reactions; 1109 compounds; 760 enzymes; 443 microorganism entries; 230 biotransformation rules; 50 organic functional groups; 76 reactions of naphthalene 1,2-dioxygenase; 109 reactions of toluene dioxygenase; Graphical UM-BBD Overview; and Other Graphics (Metapathway and Pathway Maps and Reaction Mechanisms).

• cite using:
  Ellis LBM, Roe D, Wackett LP (2006) "The University of Minnesota Biocatalysis/Biodegradation Database: The First Decade," Nucleic Acids Research 34: D517-D521. Abstract | Full Text

• For more information join our email list. Comments related to the database are appreciated; contact us.